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Ucsc Genome Browser

Recent Publications on ucsc genome browser :

Using SIFT and PolyPhen to Predict Loss-of-Function and Gain-of-Function Mutations.
Context: The interpretation of novel missense variants is a challenge with...
1 Institute of Biomedical and Clinical Science, Peninsula Medical School, Genet Test Mol Biomarkers. 2010 Jul 19.
DOI Direct Link
BigWig and BigBed: enabling browsing of large distributed data sets.
SUMMARY: BigWig and BigBed files are compressed binary indexed files...
Center for Biomolecular Science and Engineering, School of Engineering, Bioinformatics. 2010 Jul 17.
DOI Direct Link
Genome-wide Functional Element Detection Using Pairwise Statistical Alignment Outperforms Multiple Genome Footprinting Techniques.
MOTIVATION: Comparative genomic sequence analysis is a powerful approach...
Department of Statistics, Oxford University, Oxford UK. Bioinformatics. 2010 Jul 7.
DOI Direct Link
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
High-throughput sequencing platforms are generating massive amounts of...
Center for Applied Genomics, Children's Hospital of Philadelphia, Nucleic Acids Res. 2010 Jul 3.
DOI Direct Link
methGraph: a genome visualization tool for PCR-based methylation assays.
Abnormalities in DNA methylation of CpG islands that play a role in gene...
Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium. Epigenetics. 2010 Feb;5(2):159-63. Epub 2010 Feb 11.

Patents:

US Patent No.Title
7754428 Fetal methylation markers
7557198 Acute myelogenous leukemia biomarkers
7553947 Method for gene identification signature (GIS) analysis
7534875 Compositions for glioma classification
7485709 Identification of a novel BHD gene